RchyOptimyx
This package is for version 3.9 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see RchyOptimyx.
Optimyzed Cellular Hierarchies for Flow Cytometry
Bioconductor version: 3.9
Constructs a hierarchy of cells using flow cytometry for maximization of an external variable (e.g., a clinical outcome or a cytokine response).
Author: Adrin Jalali, Nima Aghaeepour
Maintainer: Adrin Jalali <adrin.jalali at gmail.com>, Nima Aghaeepour <naghaeep at gmail.com>
citation("RchyOptimyx")):
Installation
To install this package, start R (version "3.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("RchyOptimyx")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("RchyOptimyx")| flowType package | R Script | |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | FlowCytometry, Software |
| Version | 2.24.0 |
| In Bioconductor since | BioC 2.10 (R-2.15) (12 years) |
| License | Artistic-2.0 |
| Depends | R (>= 2.10) |
| Imports | Rgraphviz, sfsmisc, graphics, methods, graph, grDevices, flowType(>= 2.0.0) |
| System Requirements | |
| URL |
See More
| Suggests | flowCore |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | RchyOptimyx_2.24.0.tar.gz |
| Windows Binary | RchyOptimyx_2.24.0.zip |
| Mac OS X 10.11 (El Capitan) | RchyOptimyx_2.24.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/RchyOptimyx |
| Source Repository (Developer Access) | git clone [email protected]:packages/RchyOptimyx |
| Bioc Package Browser | https://code.bioconductor.org/browse/RchyOptimyx/ |
| Package Short Url | https://bioconductor.org/packages/RchyOptimyx/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.9 | Source Archive |