Menu

RUVcorr

This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see RUVcorr.

Removal of unwanted variation for gene-gene correlations and related analysis


Bioconductor version: 3.9

RUVcorr allows to apply global removal of unwanted variation (ridged version of RUV) to real and simulated gene expression data.

Author: Saskia Freytag

Maintainer: Saskia Freytag <freytag.s at wehi.edu.au>

Citation (from within R, enter citation("RUVcorr")):

Installation

To install this package, start R (version "3.6") and enter: 


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("RUVcorr")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("RUVcorr")
RUVcorr PDF R Script
Reference Manual PDF
NEWS Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews GeneExpression, Normalization, Software
Version 1.16.0
In Bioconductor since BioC 3.1 (R-3.2) (9 years)
License GPL-2
Depends
Imports corrplot, MASS, stats, lattice, grDevices, gridExtra, snowfall, psych, BiocParallel, grid, bladderbatch, reshape2
System Requirements
URL
See More
Suggests knitr, BiocStyle, hgu133a2.db
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package RUVcorr_1.16.0.tar.gz
Windows Binary RUVcorr_1.16.0.zip
Mac OS X 10.11 (El Capitan) RUVcorr_1.16.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/RUVcorr
Source Repository (Developer Access) git clone [email protected]:packages/RUVcorr
Bioc Package Browser https://code.bioconductor.org/browse/RUVcorr/
Package Short Url https://bioconductor.org/packages/RUVcorr/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.9 Source Archive