RSVSim
This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see RSVSim.
RSVSim: an R/Bioconductor package for the simulation of structural variations
Bioconductor version: 3.9
RSVSim is a package for the simulation of deletions, insertions, inversion, tandem-duplications and translocations of various sizes in any genome available as FASTA-file or BSgenome data package. SV breakpoints can be placed uniformly accross the whole genome, with a bias towards repeat regions and regions of high homology (for hg19) or at user-supplied coordinates.
Author: Christoph Bartenhagen
Maintainer: Christoph Bartenhagen <c.bartenhagen at uni-koeln.de>
citation("RSVSim")):
Installation
To install this package, start R (version "3.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("RSVSim")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("RSVSim")| RSVSim: an R/Bioconductor package for the simulation of structural variations | R Script | |
| Reference Manual |
Details
| biocViews | Sequencing, Software |
| Version | 1.24.0 |
| In Bioconductor since | BioC 2.12 (R-3.0) (11 years) |
| License | LGPL-3 |
| Depends | R (>= 3.0.0), Biostrings, GenomicRanges |
| Imports | methods, IRanges, ShortRead |
| System Requirements | |
| URL |
See More
| Suggests | BSgenome.Hsapiens.UCSC.hg19, BSgenome.Hsapiens.UCSC.hg19.masked, MASS, rtracklayer |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | RSVSim_1.24.0.tar.gz |
| Windows Binary | RSVSim_1.24.0.zip |
| Mac OS X 10.11 (El Capitan) | RSVSim_1.24.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/RSVSim |
| Source Repository (Developer Access) | git clone [email protected]:packages/RSVSim |
| Bioc Package Browser | https://code.bioconductor.org/browse/RSVSim/ |
| Package Short Url | https://bioconductor.org/packages/RSVSim/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.9 | Source Archive |