RNAinteract
This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see RNAinteract.
Estimate Pairwise Interactions from multidimensional features
Bioconductor version: 3.9
RNAinteract estimates genetic interactions from multi-dimensional read-outs like features extracted from images. The screen is assumed to be performed in multi-well plates or similar designs. Starting from a list of features (e.g. cell number, area, fluorescence intensity) per well, genetic interactions are estimated. The packages provides functions for reporting interacting gene pairs, plotting heatmaps and double RNAi plots. An HTML report can be written for quality control and analysis.
Author: Bernd Fischer <b.fischer at dkfz.de>
Maintainer: Bernd Fischer <b.fischer at dkfz.de>
citation("RNAinteract")):
Installation
To install this package, start R (version "3.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("RNAinteract")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("RNAinteract")| RNAinteract | R Script | |
| Reference Manual |
Details
| biocViews | CellBasedAssays, ImmunoOncology, Preprocessing, QualityControl, Software, Visualization |
| Version | 1.32.0 |
| In Bioconductor since | BioC 2.8 (R-2.13) (13 years) |
| License | Artistic-2.0 |
| Depends | R (>= 2.12.0), abind, locfit, Biobase |
| Imports | RColorBrewer, ICS, ICSNP, cellHTS2, geneplotter, gplots, grid, hwriter, lattice, latticeExtra, limma, methods, splots(>= 1.13.12) |
| System Requirements | |
| URL |
See More
| Suggests | |
| Linking To | |
| Enhances | |
| Depends On Me | RNAinteractMAPK |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | RNAinteract_1.32.0.tar.gz |
| Windows Binary | RNAinteract_1.32.0.zip |
| Mac OS X 10.11 (El Capitan) | RNAinteract_1.32.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/RNAinteract |
| Source Repository (Developer Access) | git clone [email protected]:packages/RNAinteract |
| Bioc Package Browser | https://code.bioconductor.org/browse/RNAinteract/ |
| Package Short Url | https://bioconductor.org/packages/RNAinteract/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.9 | Source Archive |