RDRToolbox
This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see RDRToolbox.
A package for nonlinear dimension reduction with Isomap and LLE.
Bioconductor version: 3.9
A package for nonlinear dimension reduction using the Isomap and LLE algorithm. It also includes a routine for computing the Davis-Bouldin-Index for cluster validation, a plotting tool and a data generator for microarray gene expression data and for the Swiss Roll dataset.
Author: Christoph Bartenhagen
Maintainer: Christoph Bartenhagen <c.bartenhagen at uni-koeln.de>
citation("RDRToolbox")):
Installation
To install this package, start R (version "3.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("RDRToolbox")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("RDRToolbox")| A package for nonlinear dimension reduction with Isomap and LLE. | R Script | |
| Reference Manual |
Details
| biocViews | Clustering, DimensionReduction, FeatureExtraction, Microarray, Software, Visualization |
| Version | 1.34.0 |
| In Bioconductor since | BioC 2.7 (R-2.12) (13.5 years) |
| License | GPL (>= 2) |
| Depends | R (>= 2.9.0) |
| Imports | graphics, grDevices, methods, stats, MASS, rgl |
| System Requirements | |
| URL |
See More
| Suggests | golubEsets |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | RDRToolbox_1.34.0.tar.gz |
| Windows Binary | RDRToolbox_1.34.0.zip |
| Mac OS X 10.11 (El Capitan) | RDRToolbox_1.34.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/RDRToolbox |
| Source Repository (Developer Access) | git clone [email protected]:packages/RDRToolbox |
| Bioc Package Browser | https://code.bioconductor.org/browse/RDRToolbox/ |
| Package Short Url | https://bioconductor.org/packages/RDRToolbox/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.9 | Source Archive |