RDAVIDWebService
This package is for version 3.9 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see RDAVIDWebService.
An R Package for retrieving data from DAVID into R objects using Web Services API.
Bioconductor version: 3.9
Tools for retrieving data from the Database for Annotation, Visualization and Integrated Discovery (DAVID) using Web Services into R objects. This package offers the main functionalities of DAVID website including: i) user friendly connectivity to upload gene/background list/s, change gene/background position, select current specie/s, select annotations, etc. ii) Reports of the submitted Gene List, Annotation Category Summary, Gene/Term Clusters, Functional Annotation Chart, Functional Annotation Table
Author: Cristobal Fresno and Elmer A. Fernandez
Maintainer: Cristobal Fresno <cfresno at bdmg.com.ar>
citation("RDAVIDWebService")):
Installation
To install this package, start R (version "3.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("RDAVIDWebService")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("RDAVIDWebService")| RDAVIDWebService: a versatile R interface to DAVID | R Script | |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | DifferentialExpression, GraphAndNetwork, Software, Visualization |
| Version | 1.22.0 |
| In Bioconductor since | BioC 2.13 (R-3.0) (10.5 years) |
| License | GPL (>=2) |
| Depends | R (>= 2.14.1), methods, graph, GOstats, ggplot2 |
| Imports | Category, GO.db, RBGL, rJava |
| System Requirements | |
| URL | http://www.bdmg.com.ar http://david.abcc.ncifcrf.gov/ |
See More
| Suggests | Rgraphviz |
| Linking To | |
| Enhances | |
| Depends On Me | CompGO |
| Imports Me | |
| Suggests Me | FGNet, IntramiRExploreR |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | RDAVIDWebService_1.22.0.tar.gz |
| Windows Binary | RDAVIDWebService_1.22.0.zip |
| Mac OS X 10.11 (El Capitan) | RDAVIDWebService_1.22.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/RDAVIDWebService |
| Source Repository (Developer Access) | git clone [email protected]:packages/RDAVIDWebService |
| Bioc Package Browser | https://code.bioconductor.org/browse/RDAVIDWebService/ |
| Package Short Url | https://bioconductor.org/packages/RDAVIDWebService/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.9 | Source Archive |