PharmacoGx
This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see PharmacoGx.
Analysis of Large-Scale Pharmacogenomic Data
Bioconductor version: 3.9
Contains a set of functions to perform large-scale analysis of pharmacogenomic data.
Author: Petr Smirnov, Zhaleh Safikhani, Mark Freeman, Benjamin Haibe-Kains
Maintainer: Benjamin Haibe-Kains <benjamin.haibe.kains at utoronto.ca>
Citation (from within R, enter
citation("PharmacoGx")):
Installation
To install this package, start R (version "3.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("PharmacoGx")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("PharmacoGx")| Creating a PharmacoSet object | R Script | |
| PharmacoGx: an R package for analysis of large pharmacogenomic datasets | R Script | |
| Reference Manual | ||
| README | Text |
Details
| biocViews | Classification, GeneExpression, Pharmacogenetics, Pharmacogenomics, Software |
| Version | 1.14.2 |
| In Bioconductor since | BioC 3.4 (R-3.3) (7.5 years) |
| License | Artistic-2.0 |
| Depends | R (>= 3.6) |
| Imports | Biobase, piano, magicaxis, RColorBrewer, parallel, caTools, methods, downloader, stats, utils, graphics, grDevices, lsa, reshape2 |
| System Requirements | |
| URL | |
| Bug Reports | https://github.com/bhklab/PharmacoGx/issues |
See More
| Suggests | xtable, testthat |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | Xeva |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | PharmacoGx_1.14.2.tar.gz |
| Windows Binary | PharmacoGx_1.14.2.zip |
| Mac OS X 10.11 (El Capitan) | PharmacoGx_1.13.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/PharmacoGx |
| Source Repository (Developer Access) | git clone [email protected]:packages/PharmacoGx |
| Bioc Package Browser | https://code.bioconductor.org/browse/PharmacoGx/ |
| Package Short Url | https://bioconductor.org/packages/PharmacoGx/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.9 | Source Archive |