PICS
This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see PICS.
Probabilistic inference of ChIP-seq
Bioconductor version: 3.9
Probabilistic inference of ChIP-Seq using an empirical Bayes mixture model approach.
Author: Xuekui Zhang <xzhang at stat.ubc.ca>, Raphael Gottardo <rgottard at fhcrc.org>
Maintainer: Renan Sauteraud <rsautera at fhcrc.org>
Citation (from within R, enter
citation("PICS")):
Installation
To install this package, start R (version "3.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("PICS")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("PICS")| The PICS users guide | R Script | |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | ChIPSeq, Clustering, Sequencing, Software, Visualization |
| Version | 2.28.0 |
| In Bioconductor since | BioC 2.6 (R-2.11) (14 years) |
| License | Artistic-2.0 |
| Depends | R (>= 2.14.0), BiocGenerics(>= 0.1.3) |
| Imports | methods, stats4, IRanges, GenomicRanges, graphics, grDevices, stats, Rsamtools, GenomicAlignments, S4Vectors |
| System Requirements | GSL (GNU Scientific Library) |
| URL |
See More
| Suggests | ShortRead, rtracklayer, parallel |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | PING |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | PICS_2.28.0.tar.gz |
| Windows Binary | PICS_2.28.0.zip |
| Mac OS X 10.11 (El Capitan) | PICS_2.28.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/PICS |
| Source Repository (Developer Access) | git clone [email protected]:packages/PICS |
| Bioc Package Browser | https://code.bioconductor.org/browse/PICS/ |
| Package Short Url | https://bioconductor.org/packages/PICS/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.9 | Source Archive |