PAIRADISE
This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see PAIRADISE.
PAIRADISE: Paired analysis of differential isoform expression
Bioconductor version: 3.9
This package implements the PAIRADISE procedure for detecting differential isoform expression between matched replicates in paired RNA-Seq data.
Author: Levon Demirdjian, Shihao Shen, Ying Nian Wu, Yi Xing
Maintainer: Qiang Hu <Qiang.Hu at roswellpark.org>, Levon Demirdjian <levondem at ucla.edu>
citation("PAIRADISE")):
Installation
To install this package, start R (version "3.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("PAIRADISE")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("PAIRADISE")| PAIRADISE | HTML | R Script |
| Reference Manual | ||
| LICENSE | Text |
Details
| biocViews | AlternativeSplicing, DifferentialExpression, ImmunoOncology, RNASeq, Software, StatisticalMethod |
| Version | 1.0.0 |
| In Bioconductor since | BioC 3.9 (R-3.6) (5 years) |
| License | MIT + file LICENSE |
| Depends | R (>= 3.6), nloptr |
| Imports | SummarizedExperiment, S4Vectors, stats, methods, abind, BiocParallel |
| System Requirements | |
| URL |
See More
| Suggests | testthat, knitr, rmarkdown, BiocStyle |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | PAIRADISE_1.0.0.tar.gz |
| Windows Binary | PAIRADISE_1.0.0.zip (32- & 64-bit) |
| Mac OS X 10.11 (El Capitan) | PAIRADISE_1.0.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/PAIRADISE |
| Source Repository (Developer Access) | git clone [email protected]:packages/PAIRADISE |
| Bioc Package Browser | https://code.bioconductor.org/browse/PAIRADISE/ |
| Package Short Url | https://bioconductor.org/packages/PAIRADISE/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.9 | Source Archive |