OrderedList
This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see OrderedList.
Similarities of Ordered Gene Lists
Bioconductor version: 3.9
Detection of similarities between ordered lists of genes. Thereby, either simple lists can be compared or gene expression data can be used to deduce the lists. Significance of similarities is evaluated by shuffling lists or by resampling in microarray data, respectively.
Author: Xinan Yang, Stefanie Scheid, Claudio Lottaz
Maintainer: Claudio Lottaz <Claudio.Lottaz at klinik.uni-regensburg.de>
citation("OrderedList")):
Installation
To install this package, start R (version "3.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("OrderedList")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("OrderedList")| Similarities of Ordered Gene Lists | R Script | |
| Reference Manual |
Details
| biocViews | DifferentialExpression, Microarray, MultipleComparison, Software |
| Version | 1.56.0 |
| In Bioconductor since | BioC 1.8 (R-2.3) (18 years) |
| License | GPL (>= 2) |
| Depends | R (>= 2.1.0), Biobase(>= 1.5.12), twilight(>= 1.9.2), methods |
| Imports | Biobase, graphics, methods, stats, twilight |
| System Requirements | |
| URL | http://compdiag.molgen.mpg.de/software/index.shtml |
See More
| Suggests | |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | OrderedList_1.56.0.tar.gz |
| Windows Binary | OrderedList_1.56.0.zip (32- & 64-bit) |
| Mac OS X 10.11 (El Capitan) | OrderedList_1.56.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/OrderedList |
| Source Repository (Developer Access) | git clone [email protected]:packages/OrderedList |
| Bioc Package Browser | https://code.bioconductor.org/browse/OrderedList/ |
| Package Short Url | https://bioconductor.org/packages/OrderedList/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.9 | Source Archive |