OGSA
This package is for version 3.9 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see OGSA.
Outlier Gene Set Analysis
Bioconductor version: 3.9
OGSA provides a global estimate of pathway deregulation in cancer subtypes by integrating the estimates of significance for individual pathway members that have been identified by outlier analysis.
Author: Michael F. Ochs <ochsm at tcnj.edu>
Maintainer: Michael F. Ochs <ochsm at tcnj.edu>
citation("OGSA")):
Installation
To install this package, start R (version "3.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("OGSA")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("OGSA")| OGSA Users Manual | R Script | |
| Reference Manual |
Details
| biocViews | CopyNumberVariation, GeneExpression, Microarray, Software |
| Version | 1.14.0 |
| In Bioconductor since | BioC 3.2 (R-3.2) (8.5 years) |
| License | GPL (== 2) |
| Depends | R (>= 3.2.0) |
| Imports | gplots (>= 2.8.0), limma(>= 3.18.13), Biobase |
| System Requirements | |
| URL |
See More
| Suggests | |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | OGSA_1.14.0.tar.gz |
| Windows Binary | OGSA_1.14.0.zip |
| Mac OS X 10.11 (El Capitan) | OGSA_1.14.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/OGSA |
| Source Repository (Developer Access) | git clone [email protected]:packages/OGSA |
| Bioc Package Browser | https://code.bioconductor.org/browse/OGSA/ |
| Package Short Url | https://bioconductor.org/packages/OGSA/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.9 | Source Archive |