NetSAM
This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see NetSAM.
Network Seriation And Modularization
Bioconductor version: 3.9
The NetSAM (Network Seriation and Modularization) package takes an edge-list representation of a network as an input, performs network seriation and modularization analysis, and generates as files that can be used as an input for the one-dimensional network visualization tool NetGestalt (http://www.netgestalt.org) or other network analysis.
Author: Jing Wang <jing.wang.2 at vanderbilt.edu>
Maintainer: Bing Zhang <bing.zhang at vanderbilt.edu>
citation("NetSAM")):
Installation
To install this package, start R (version "3.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("NetSAM")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("NetSAM")| NetSAM | R Script | |
| Reference Manual |
Details
| biocViews | Network, Software, Visualization |
| Version | 1.24.0 |
| In Bioconductor since | BioC 2.13 (R-3.0) (10.5 years) |
| License | LGPL |
| Depends | R (>= 2.15.1), methods, igraph (>= 0.6-1), seriation (>= 1.0-6), graph(>= 1.34.0) |
| Imports | methods |
| System Requirements | |
| URL |
See More
| Suggests | RUnit, BiocGenerics |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | NetSAM_1.24.0.tar.gz |
| Windows Binary | NetSAM_1.24.0.zip |
| Mac OS X 10.11 (El Capitan) | NetSAM_1.24.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/NetSAM |
| Source Repository (Developer Access) | git clone [email protected]:packages/NetSAM |
| Bioc Package Browser | https://code.bioconductor.org/browse/NetSAM/ |
| Package Short Url | https://bioconductor.org/packages/NetSAM/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.9 | Source Archive |