Mirsynergy

This package is for version 3.9 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see Mirsynergy.

Mirsynergy

Bioconductor version: 3.9

Detect synergistic miRNA regulatory modules by overlapping neighbourhood expansion.

Author: Yue Li

Maintainer: Yue Li <yueli at cs.toronto.edu>

Citation (from within R, enter citation("Mirsynergy")):

Installation

To install this package, start R (version "3.6") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("Mirsynergy")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("Mirsynergy")

Mirsynergy	PDF	R Script
Reference Manual	PDF
NEWS	Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	Clustering, Software
Version	1.20.0
In Bioconductor since	BioC 2.14 (R-3.1) (10 years)
License	GPL-2
Depends	R (>= 3.0.2), igraph, ggplot2
Imports	graphics, grDevices, gridExtra, Matrix, parallel, RColorBrewer, reshape, scales, utils
System Requirements
URL	http://www.cs.utoronto.ca/~yueli/Mirsynergy.html

Suggests	glmnet, RUnit, BiocGenerics, knitr
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report	Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	Mirsynergy_1.20.0.tar.gz
Windows Binary	Mirsynergy_1.20.0.zip (32- & 64-bit)
Mac OS X 10.11 (El Capitan)	Mirsynergy_1.20.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/Mirsynergy
Source Repository (Developer Access)	git clone [email protected]:packages/Mirsynergy
Bioc Package Browser	https://code.bioconductor.org/browse/Mirsynergy/
Package Short Url	https://bioconductor.org/packages/Mirsynergy/
Package Downloads Report	Download Stats
Old Source Packages for BioC 3.9	Source Archive