MethTargetedNGS

This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see MethTargetedNGS.

Perform Methylation Analysis on Next Generation Sequencing Data

Bioconductor version: 3.9

Perform step by step methylation analysis of Next Generation Sequencing data.

Author: Muhammad Ahmer Jamil with Contribution of Prof. Holger Frohlich and Priv.-Doz. Dr. Osman El-Maarri

Maintainer: Muhammad Ahmer Jamil <engr.ahmerjamil at gmail.com>

Citation (from within R, enter citation("MethTargetedNGS")):

To install this package, start R (version "3.6") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("MethTargetedNGS")

For older versions of R, please refer to the appropriate Bioconductor release.

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("MethTargetedNGS")

Introduction to MethTargetedNGS	PDF	R Script
Reference Manual	PDF

biocViews	Alignment, DataImport, Genetics, ResearchField, SequenceMatching, Sequencing, Software
Version	1.16.0
In Bioconductor since	BioC 3.1 (R-3.2) (9 years)
License	Artistic-2.0
Depends	R (>= 3.1.2), stringr, seqinr, gplots, Biostrings
Imports
System Requirements	HMMER3
URL

Follow Installation instructions to use this package in your R session.

Source Package	MethTargetedNGS_1.16.0.tar.gz
Windows Binary	MethTargetedNGS_1.16.0.zip (32- & 64-bit)
Mac OS X 10.11 (El Capitan)	MethTargetedNGS_1.16.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/MethTargetedNGS
Source Repository (Developer Access)	git clone [email protected]:packages/MethTargetedNGS
Bioc Package Browser	https://code.bioconductor.org/browse/MethTargetedNGS/
Package Short Url	https://bioconductor.org/packages/MethTargetedNGS/
Package Downloads Report	Download Stats
Old Source Packages for BioC 3.9	Source Archive