MSstatsQC
This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see MSstatsQC.
Longitudinal system suitability monitoring and quality control for proteomic experiments
Bioconductor version: 3.9
MSstatsQC is an R package which provides longitudinal system suitability monitoring and quality control tools for proteomic experiments.
Author: Eralp Dogu [aut, cre], Sara Taheri [aut], Olga Vitek [aut]
Maintainer: Eralp Dogu <eralp.dogu at gmail.com>
Citation (from within R, enter
citation("MSstatsQC")):
Installation
To install this package, start R (version "3.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("MSstatsQC")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("MSstatsQC")| MSstatsQC | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | ImmunoOncology, MassSpectrometry, Proteomics, QualityControl, Software |
| Version | 2.2.0 |
| In Bioconductor since | BioC 3.6 (R-3.4) (6.5 years) |
| License | Artistic License 2.0 |
| Depends | |
| Imports | dplyr, plotly, RecordLinkage, ggplot2, ggExtra, stats, grid, MSnbase, qcmetrics |
| System Requirements | |
| URL | http://msstats.org/msstatsqc |
| Bug Reports | https://groups.google.com/forum/#!forum/msstatsqc |
See More
| Suggests | knitr, rmarkdown, testthat, RforProteomics |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | MSstatsQCgui |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | MSstatsQC_2.2.0.tar.gz |
| Windows Binary | MSstatsQC_2.2.0.zip |
| Mac OS X 10.11 (El Capitan) | MSstatsQC_2.2.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/MSstatsQC |
| Source Repository (Developer Access) | git clone [email protected]:packages/MSstatsQC |
| Bioc Package Browser | https://code.bioconductor.org/browse/MSstatsQC/ |
| Package Short Url | https://bioconductor.org/packages/MSstatsQC/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.9 | Source Archive |