MPFE
This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see MPFE.
Estimation of the amplicon methylation pattern distribution from bisulphite sequencing data
Bioconductor version: 3.9
Estimate distribution of methylation patterns from a table of counts from a bisulphite sequencing experiment given a non-conversion rate and read error rate.
Author: Peijie Lin, Sylvain Foret, Conrad Burden
Maintainer: Conrad Burden <conrad.burden at anu.edu.au>
citation("MPFE")):
Installation
To install this package, start R (version "3.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("MPFE")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("MPFE")| MPFE | R Script | |
| Reference Manual | ||
| README | Text |
Details
| biocViews | DNAMethylation, HighThroughputSequencingData, MethylSeq, Software |
| Version | 1.20.0 |
| In Bioconductor since | BioC 3.0 (R-3.1) (9.5 years) |
| License | GPL (>= 3) |
| Depends | |
| Imports | |
| System Requirements | |
| URL |
See More
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| Depends On Me | |
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| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | MPFE_1.20.0.tar.gz |
| Windows Binary | MPFE_1.20.0.zip |
| Mac OS X 10.11 (El Capitan) | MPFE_1.20.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/MPFE |
| Source Repository (Developer Access) | git clone [email protected]:packages/MPFE |
| Bioc Package Browser | https://code.bioconductor.org/browse/MPFE/ |
| Package Short Url | https://bioconductor.org/packages/MPFE/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.9 | Source Archive |