LPEadj
This package is for version 3.9 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see LPEadj.
A correction of the local pooled error (LPE) method to replace the asymptotic variance adjustment with an unbiased adjustment based on sample size.
Bioconductor version: 3.9
Two options are added to the LPE algorithm. The original LPE method sets all variances below the max variance in the ordered distribution of variances to the maximum variance. in LPEadj this option is turned off by default. The second option is to use a variance adjustment based on sample size rather than pi/2. By default the LPEadj uses the sample size based variance adjustment.
Author: Carl Murie <carl.murie at mcgill.ca>, Robert Nadon <robert.nadon at mcgill.ca>
Maintainer: Carl Murie <carl.murie at mcgill.ca>
citation("LPEadj")):
Installation
To install this package, start R (version "3.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("LPEadj")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("LPEadj")| LPEadj test for microarray data with small number of replicates | R Script | |
| Reference Manual |
Details
| biocViews | Microarray, Proteomics, Software |
| Version | 1.44.0 |
| In Bioconductor since | BioC 2.3 (R-2.8) (15.5 years) |
| License | LGPL |
| Depends | LPE |
| Imports | LPE, stats |
| System Requirements | |
| URL |
See More
| Suggests | |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | LPEadj_1.44.0.tar.gz |
| Windows Binary | LPEadj_1.44.0.zip |
| Mac OS X 10.11 (El Capitan) | LPEadj_1.44.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/LPEadj |
| Source Repository (Developer Access) | git clone [email protected]:packages/LPEadj |
| Bioc Package Browser | https://code.bioconductor.org/browse/LPEadj/ |
| Package Short Url | https://bioconductor.org/packages/LPEadj/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.9 | Source Archive |