GOsummaries
This package is for version 3.9 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see GOsummaries.
Word cloud summaries of GO enrichment analysis
Bioconductor version: 3.9
A package to visualise Gene Ontology (GO) enrichment analysis results on gene lists arising from different analyses such clustering or PCA. The significant GO categories are visualised as word clouds that can be combined with different plots summarising the underlying data.
Author: Raivo Kolde <raivo.kolde at eesti.ee>
Maintainer: Raivo Kolde <raivo.kolde at eesti.ee>
citation("GOsummaries")):
Installation
To install this package, start R (version "3.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("GOsummaries")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("GOsummaries")| GOsummaries basics | R Script | |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | Clustering, GO, GeneExpression, Software, Visualization |
| Version | 2.20.0 |
| In Bioconductor since | BioC 3.0 (R-3.1) (9.5 years) |
| License | GPL (>= 2) |
| Depends | R (>= 2.15), Rcpp |
| Imports | plyr, grid, gProfileR, reshape2, limma, ggplot2, gtable |
| System Requirements | |
| URL | https://github.com/raivokolde/GOsummaries |
See More
| Suggests | vegan |
| Linking To | Rcpp |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | GOsummaries_2.20.0.tar.gz |
| Windows Binary | GOsummaries_2.20.0.zip (32- & 64-bit) |
| Mac OS X 10.11 (El Capitan) | GOsummaries_2.20.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/GOsummaries |
| Source Repository (Developer Access) | git clone [email protected]:packages/GOsummaries |
| Bioc Package Browser | https://code.bioconductor.org/browse/GOsummaries/ |
| Package Short Url | https://bioconductor.org/packages/GOsummaries/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.9 | Source Archive |