GGBase
This package is for version 3.9 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see GGBase.
GGBase infrastructure for genetics of gene expression package GGtools
Bioconductor version: 3.9
infrastructure
Author: VJ Carey <stvjc at channing.harvard.edu>
Maintainer: VJ Carey <stvjc at channing.harvard.edu>
Citation (from within R, enter
citation("GGBase")
):
Installation
To install this package, start R (version "3.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("GGBase")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("GGBase")
GGBase -- infrastructure for GGtools, genetics of gene expression | R Script | |
Reference Manual | ||
NEWS | Text |
Details
biocViews | Genetics, Infrastructure, Software |
Version | 3.46.0 |
In Bioconductor since | BioC 2.2 (R-2.7) (16 years) |
License | Artistic-2.0 |
Depends | R (>= 2.14), methods, snpStats |
Imports | limma, genefilter, Biobase, BiocGenerics, S4Vectors, IRanges, Matrix, AnnotationDbi, digest, GenomicRanges, SummarizedExperiment |
System Requirements | |
URL |
See More
Suggests | GGtools, illuminaHumanv1.db, knitr |
Linking To | |
Enhances | |
Depends On Me | ceu1kg, ceu1kgv, ceuhm3, dsQTL, GGdata, GGtools, hmyriB36, yri1kgv |
Imports Me | |
Suggests Me | |
Links To Me | |
Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
Source Package | GGBase_3.46.0.tar.gz |
Windows Binary | GGBase_3.46.0.zip |
Mac OS X 10.11 (El Capitan) | GGBase_3.46.0.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/GGBase |
Source Repository (Developer Access) | git clone [email protected]:packages/GGBase |
Bioc Package Browser | https://code.bioconductor.org/browse/GGBase/ |
Package Short Url | https://bioconductor.org/packages/GGBase/ |
Package Downloads Report | Download Stats |
Old Source Packages for BioC 3.9 | Source Archive |