GA4GHclient
This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see GA4GHclient.
A Bioconductor package for accessing GA4GH API data servers
Bioconductor version: 3.9
GA4GHclient provides an easy way to access public data servers through Global Alliance for Genomics and Health (GA4GH) genomics API. It provides low-level access to GA4GH API and translates response data into Bioconductor-based class objects.
Author: Welliton Souza [aut, cre], Benilton Carvalho [ctb], Cristiane Rocha [ctb]
Maintainer: Welliton Souza <well309 at gmail.com>
citation("GA4GHclient")):
Installation
To install this package, start R (version "3.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("GA4GHclient")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("GA4GHclient")| GA4GHclient | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | DataRepresentation, Software, ThirdPartyClient |
| Version | 1.8.0 |
| In Bioconductor since | BioC 3.5 (R-3.4) (7 years) |
| License | GPL (>= 2) |
| Depends | S4Vectors |
| Imports | BiocGenerics, Biostrings, dplyr, GenomeInfoDb, GenomicRanges, httr, IRanges, jsonlite, methods, VariantAnnotation |
| System Requirements | |
| URL | https://github.com/labbcb/GA4GHclient |
| Bug Reports | https://github.com/labbcb/GA4GHclient/issues |
See More
| Suggests | AnnotationDbi, BiocStyle, DT, knitr, org.Hs.eg.db, rmarkdown, testthat, TxDb.Hsapiens.UCSC.hg19.knownGene |
| Linking To | |
| Enhances | |
| Depends On Me | GA4GHshiny |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | GA4GHclient_1.8.0.tar.gz |
| Windows Binary | GA4GHclient_1.8.0.zip (32- & 64-bit) |
| Mac OS X 10.11 (El Capitan) | GA4GHclient_1.8.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/GA4GHclient |
| Source Repository (Developer Access) | git clone [email protected]:packages/GA4GHclient |
| Bioc Package Browser | https://code.bioconductor.org/browse/GA4GHclient/ |
| Package Short Url | https://bioconductor.org/packages/GA4GHclient/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.9 | Source Archive |