ELBOW
This package is for version 3.9 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see ELBOW.
ELBOW - Evaluating foLd change By the lOgit Way
Bioconductor version: 3.9
Elbow an improved fold change test that uses cluster analysis and pattern recognition to set cut off limits that are derived directly from intrareplicate variance without assuming a normal distribution for as few as 2 biological replicates. Elbow also provides the same consistency as fold testing in cross platform analysis. Elbow has lower false positive and false negative rates than standard fold testing when both are evaluated using T testing and Statistical Analysis of Microarray using 12 replicates (six replicates each for initial and final conditions). Elbow provides a null value based on initial condition replicates and gives error bounds for results to allow better evaluation of significance.
Author: Xiangli Zhang, Natalie Bjorklund, Graham Alvare, Tom Ryzdak, Richard Sparling, Brian Fristensky
Maintainer: Graham Alvare <alvare at cc.umanitoba.ca>, Xiangli Zhang <justinzhang.xl at gmail.com>
citation("ELBOW")):
Installation
To install this package, start R (version "3.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("ELBOW")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("ELBOW")| Using ELBOW --- the definitive ELBOW tutorial | R Script | |
| Reference Manual | ||
| LICENSE | Text |
Details
| biocViews | GeneExpression, ImmunoOncology, Microarray, MultiChannel, OneChannel, RNASeq, Sequencing, Software, Technology, TwoChannel |
| Version | 1.20.0 |
| In Bioconductor since | BioC 2.14 (R-3.1) (10 years) |
| License | file LICENSE |
| Depends | R (>= 2.15.0) |
| Imports | graphics, stats, utils |
| System Requirements | |
| URL |
See More
| Suggests | DESeq, GEOquery, limma, simpleaffy, affyPLM, RColorBrewer, hgu133plus2cdf, hgu133plus2probe |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | ELBOW_1.20.0.tar.gz |
| Windows Binary | ELBOW_1.20.0.zip (64-bit only) |
| Mac OS X 10.11 (El Capitan) | ELBOW_1.20.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/ELBOW |
| Source Repository (Developer Access) | git clone [email protected]:packages/ELBOW |
| Bioc Package Browser | https://code.bioconductor.org/browse/ELBOW/ |
| Package Short Url | https://bioconductor.org/packages/ELBOW/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.9 | Source Archive |