DupChecker
This package is for version 3.9 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see DupChecker.
a package for checking high-throughput genomic data redundancy in meta-analysis
Bioconductor version: 3.9
Meta-analysis has become a popular approach for high-throughput genomic data analysis because it often can significantly increase power to detect biological signals or patterns in datasets. However, when using public-available databases for meta-analysis, duplication of samples is an often encountered problem, especially for gene expression data. Not removing duplicates would make study results questionable. We developed a Bioconductor package DupChecker that efficiently identifies duplicated samples by generating MD5 fingerprints for raw data.
Author: Quanhu Sheng, Yu Shyr, Xi Chen
Maintainer: "Quanhu SHENG" <shengqh at gmail.com>
citation("DupChecker")):
Installation
To install this package, start R (version "3.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("DupChecker")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("DupChecker")| Validate genomic data with "DupChecker" package | R Script | |
| Reference Manual |
Details
| biocViews | Preprocessing, Software |
| Version | 1.22.0 |
| In Bioconductor since | BioC 3.0 (R-3.1) (9.5 years) |
| License | GPL (>= 2) |
| Depends | |
| Imports | tools, R.utils, RCurl |
| System Requirements | |
| URL |
See More
| Suggests | knitr |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | DupChecker_1.22.0.tar.gz |
| Windows Binary | DupChecker_1.22.0.zip |
| Mac OS X 10.11 (El Capitan) | DupChecker_1.22.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/DupChecker |
| Source Repository (Developer Access) | git clone [email protected]:packages/DupChecker |
| Bioc Package Browser | https://code.bioconductor.org/browse/DupChecker/ |
| Package Short Url | https://bioconductor.org/packages/DupChecker/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.9 | Source Archive |