DeconRNASeq
This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see DeconRNASeq.
Deconvolution of Heterogeneous Tissue Samples for mRNA-Seq data
Bioconductor version: 3.9
DeconSeq is an R package for deconvolution of heterogeneous tissues based on mRNA-Seq data. It modeled expression levels from heterogeneous cell populations in mRNA-Seq as the weighted average of expression from different constituting cell types and predicted cell type proportions of single expression profiles.
Author: Ting Gong <tinggong at gmail.com> Joseph D. Szustakowski <joseph.szustakowski at novartis.com>
Maintainer: Ting Gong <tinggong at gmail.com>
citation("DeconRNASeq")):
Installation
To install this package, start R (version "3.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("DeconRNASeq")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("DeconRNASeq")| DeconRNASeq Demo | R Script | |
| Reference Manual |
Details
| biocViews | DifferentialExpression, Software |
| Version | 1.26.0 |
| In Bioconductor since | BioC 2.11 (R-2.15) (11.5 years) |
| License | GPL-2 |
| Depends | R (>= 2.14.0), limSolve, pcaMethods, ggplot2, grid |
| Imports | |
| System Requirements | |
| URL |
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| Depends On Me | |
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| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | DeconRNASeq_1.26.0.tar.gz |
| Windows Binary | DeconRNASeq_1.26.0.zip |
| Mac OS X 10.11 (El Capitan) | DeconRNASeq_1.26.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/DeconRNASeq |
| Source Repository (Developer Access) | git clone [email protected]:packages/DeconRNASeq |
| Bioc Package Browser | https://code.bioconductor.org/browse/DeconRNASeq/ |
| Package Short Url | https://bioconductor.org/packages/DeconRNASeq/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.9 | Source Archive |