DeMAND
This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see DeMAND.
DeMAND
Bioconductor version: 3.9
DEMAND predicts Drug MoA by interrogating a cell context specific regulatory network with a small number (N >= 6) of compound-induced gene expression signatures, to elucidate specific proteins whose interactions in the network is dysregulated by the compound.
Author: Jung Hoon Woo <jw2853 at columbia.edu>, Yishai Shimoni <ys2559 at columbia.edu>
Maintainer: Jung Hoon Woo <jw2853 at columbia.edu>, Mariano Alvarez <reef103 at gmail.com>
citation("DeMAND")):
Installation
To install this package, start R (version "3.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("DeMAND")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("DeMAND")| Using DeMAND | R Script | |
| Reference Manual | ||
| LICENSE | Text |
Details
| biocViews | GeneExpression, Network, NetworkEnrichment, Software, StatisticalMethod, SystemsBiology |
| Version | 1.14.0 |
| In Bioconductor since | BioC 3.2 (R-3.2) (8.5 years) |
| License | file LICENSE |
| Depends | R (>= 2.14.0), KernSmooth, methods |
| Imports | |
| System Requirements | |
| URL |
See More
| Suggests | |
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| Enhances | |
| Depends On Me | |
| Imports Me | |
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| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | DeMAND_1.14.0.tar.gz |
| Windows Binary | DeMAND_1.14.0.zip |
| Mac OS X 10.11 (El Capitan) | DeMAND_1.14.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/DeMAND |
| Source Repository (Developer Access) | git clone [email protected]:packages/DeMAND |
| Bioc Package Browser | https://code.bioconductor.org/browse/DeMAND/ |
| Package Short Url | https://bioconductor.org/packages/DeMAND/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.9 | Source Archive |