DEFormats
This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see DEFormats.
Differential gene expression data formats converter
Bioconductor version: 3.9
Convert between different data formats used by differential gene expression analysis tools.
Author: Andrzej Oleś
Maintainer: Andrzej Oleś <andrzej.oles at embl.de>
Citation (from within R, enter
citation("DEFormats")):
Installation
To install this package, start R (version "3.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("DEFormats")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("DEFormats")| Differential gene expression data formats converter | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | DifferentialExpression, GeneExpression, ImmunoOncology, RNASeq, Sequencing, Software, Transcription |
| Version | 1.12.0 |
| In Bioconductor since | BioC 3.3 (R-3.3) (8 years) |
| License | GPL-3 |
| Depends | |
| Imports | checkmate, data.table, DESeq2, edgeR(>= 3.13.4), GenomicRanges, methods, S4Vectors, stats, SummarizedExperiment |
| System Requirements | |
| URL | https://github.com/aoles/DEFormats |
| Bug Reports | https://github.com/aoles/DEFormats/issues |
See More
| Suggests | BiocStyle(>= 1.8.0), knitr, rmarkdown, testthat |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | regionReport |
| Suggests Me | ideal |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | DEFormats_1.12.0.tar.gz |
| Windows Binary | DEFormats_1.12.0.zip (32- & 64-bit) |
| Mac OS X 10.11 (El Capitan) | DEFormats_1.12.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/DEFormats |
| Source Repository (Developer Access) | git clone [email protected]:packages/DEFormats |
| Bioc Package Browser | https://code.bioconductor.org/browse/DEFormats/ |
| Package Short Url | https://bioconductor.org/packages/DEFormats/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.9 | Source Archive |