DBChIP
This package is for version 3.9 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see DBChIP.
Differential Binding of Transcription Factor with ChIP-seq
Bioconductor version: 3.9
DBChIP detects differentially bound sharp binding sites across multiple conditions, with or without matching control samples.
Author: Kun Liang
Maintainer: Kun Liang <kliang at stat.wisc.edu>
Citation (from within R, enter
citation("DBChIP")):
Installation
To install this package, start R (version "3.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("DBChIP")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("DBChIP")| DBChIP | R Script | |
| Reference Manual |
Details
| biocViews | ChIPSeq, Genetics, Sequencing, Software, Transcription |
| Version | 1.28.0 |
| In Bioconductor since | BioC 2.11 (R-2.15) (11.5 years) |
| License | GPL (>= 2) |
| Depends | R (>= 2.15.0), edgeR, DESeq |
| Imports | |
| System Requirements | |
| URL |
See More
| Suggests | ShortRead, BiocGenerics |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | metagene, metagene2 |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | DBChIP_1.28.0.tar.gz |
| Windows Binary | DBChIP_1.28.0.zip |
| Mac OS X 10.11 (El Capitan) | DBChIP_1.28.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/DBChIP |
| Source Repository (Developer Access) | git clone [email protected]:packages/DBChIP |
| Bioc Package Browser | https://code.bioconductor.org/browse/DBChIP/ |
| Package Short Url | https://bioconductor.org/packages/DBChIP/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.9 | Source Archive |