Clomial
This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see Clomial.
Infers clonal composition of a tumor
Bioconductor version: 3.9
Clomial fits binomial distributions to counts obtained from Next Gen Sequencing data of multiple samples of the same tumor. The trained parameters can be interpreted to infer the clonal structure of the tumor.
Author: Habil Zare and Alex Hu
Maintainer: Habil Zare <zare at u.washington.edu>
citation("Clomial")):
Installation
To install this package, start R (version "3.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("Clomial")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("Clomial")| A likelihood maximization approach to infer the clonal structure of a cancer using multiple tumor samples | R Script | |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | Bayesian, Clustering, DNASeq, ExomeSeq, GeneticVariability, Genetics, ImmunoOncology, MultipleComparison, Sequencing, Software, TargetedResequencing |
| Version | 1.20.0 |
| In Bioconductor since | BioC 2.14 (R-3.1) (10 years) |
| License | GPL (>= 2) |
| Depends | R (>= 2.10), matrixStats |
| Imports | methods, permute |
| System Requirements | |
| URL |
See More
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| Depends On Me | |
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| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | Clomial_1.20.0.tar.gz |
| Windows Binary | Clomial_1.20.0.zip |
| Mac OS X 10.11 (El Capitan) | Clomial_1.20.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/Clomial |
| Source Repository (Developer Access) | git clone [email protected]:packages/Clomial |
| Bioc Package Browser | https://code.bioconductor.org/browse/Clomial/ |
| Package Short Url | https://bioconductor.org/packages/Clomial/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.9 | Source Archive |