ChIPComp
This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see ChIPComp.
Quantitative comparison of multiple ChIP-seq datasets
Bioconductor version: 3.9
ChIPComp detects differentially bound sharp binding sites across multiple conditions considering matching control.
Author: Hao Wu, Li Chen, Zhaohui S.Qin, Chi Wang
Maintainer: Li Chen <li.chen at emory.edu>
Citation (from within R, enter
citation("ChIPComp")):
Installation
To install this package, start R (version "3.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("ChIPComp")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("ChIPComp")| ChIPComp | R Script | |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | ChIPSeq, Coverage, DataImport, Genetics, MultipleComparison, Sequencing, Software, Transcription |
| Version | 1.14.0 |
| In Bioconductor since | BioC 3.2 (R-3.2) (8.5 years) |
| License | GPL |
| Depends | R (>= 3.2.0), GenomicRanges, IRanges, rtracklayer, GenomeInfoDb, S4Vectors |
| Imports | Rsamtools, limma, BSgenome.Hsapiens.UCSC.hg19, BSgenome.Mmusculus.UCSC.mm9, BiocGenerics |
| System Requirements | |
| URL |
See More
| Suggests | BiocStyle, RUnit |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | ChIPComp_1.14.0.tar.gz |
| Windows Binary | ChIPComp_1.14.0.zip |
| Mac OS X 10.11 (El Capitan) | ChIPComp_1.14.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/ChIPComp |
| Source Repository (Developer Access) | git clone [email protected]:packages/ChIPComp |
| Bioc Package Browser | https://code.bioconductor.org/browse/ChIPComp/ |
| Package Short Url | https://bioconductor.org/packages/ChIPComp/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.9 | Source Archive |