CSSP
This package is for version 3.9 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see CSSP.
ChIP-Seq Statistical Power
Bioconductor version: 3.9
Power computation for ChIP-Seq data based on Bayesian estimation for local poisson counting process.
Author: Chandler Zuo, Sunduz Keles
Maintainer: Chandler Zuo<zuo at stat.wisc.edu>
Citation (from within R, enter
citation("CSSP")):
Installation
To install this package, start R (version "3.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("CSSP")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("CSSP")| cssp.pdf | R Script | |
| Reference Manual |
Details
| biocViews | Bayesian, ChIPSeq, QualityControl, Sequencing, Software |
| Version | 1.22.0 |
| In Bioconductor since | BioC 2.13 (R-3.0) (10.5 years) |
| License | GPL-2 |
| Depends | |
| Imports | methods, splines, stats, utils |
| System Requirements | |
| URL |
See More
| Suggests | testthat |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | CSSP_1.22.0.tar.gz |
| Windows Binary | CSSP_1.22.0.zip (32- & 64-bit) |
| Mac OS X 10.11 (El Capitan) | CSSP_1.22.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/CSSP |
| Source Repository (Developer Access) | git clone [email protected]:packages/CSSP |
| Bioc Package Browser | https://code.bioconductor.org/browse/CSSP/ |
| Package Short Url | https://bioconductor.org/packages/CSSP/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.9 | Source Archive |