CGHnormaliter
This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see CGHnormaliter.
Normalization of array CGH data with imbalanced aberrations.
Bioconductor version: 3.9
Normalization and centralization of array comparative genomic hybridization (aCGH) data. The algorithm uses an iterative procedure that effectively eliminates the influence of imbalanced copy numbers. This leads to a more reliable assessment of copy number alterations (CNAs).
Author: Bart P.P. van Houte, Thomas W. Binsl, Hannes Hettling
Maintainer: Bart P.P. van Houte <bvhoute at few.vu.nl>
citation("CGHnormaliter")):
Installation
To install this package, start R (version "3.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("CGHnormaliter")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("CGHnormaliter")| CGHnormaliter | R Script | |
| Reference Manual |
Details
| biocViews | Microarray, Preprocessing, Software |
| Version | 1.38.0 |
| In Bioconductor since | BioC 2.5 (R-2.10) (14.5 years) |
| License | GPL (>= 3) |
| Depends | CGHcall(>= 2.17.0), CGHbase(>= 1.15.0) |
| Imports | Biobase, CGHbase, CGHcall, methods, stats, utils |
| System Requirements | |
| URL |
See More
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| Depends On Me | |
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| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | CGHnormaliter_1.38.0.tar.gz |
| Windows Binary | CGHnormaliter_1.38.0.zip |
| Mac OS X 10.11 (El Capitan) | CGHnormaliter_1.38.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/CGHnormaliter |
| Source Repository (Developer Access) | git clone [email protected]:packages/CGHnormaliter |
| Bioc Package Browser | https://code.bioconductor.org/browse/CGHnormaliter/ |
| Package Short Url | https://bioconductor.org/packages/CGHnormaliter/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.9 | Source Archive |