CALIB
This package is for version 3.9 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see CALIB.
Calibration model for estimating absolute expression levels from microarray data
Bioconductor version: 3.9
This package contains functions for normalizing spotted microarray data, based on a physically motivated calibration model. The model parameters and error distributions are estimated from external control spikes.
Author: Hui Zhao, Kristof Engelen, Bart De Moor and Kathleen Marchal
Maintainer: Hui Zhao <hui.zhao at biw.kuleuven.be>
citation("CALIB")):
Installation
To install this package, start R (version "3.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("CALIB")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("CALIB")| CALIB Overview | R Script | |
| Reference Manual |
Details
| biocViews | Microarray, Preprocessing, Software, TwoChannel |
| Version | 1.50.0 |
| In Bioconductor since | BioC 2.0 (R-2.5) (17 years) |
| License | LGPL |
| Depends | R (>= 2.10), limma, methods |
| Imports | limma, methods, graphics, stats, utils |
| System Requirements | |
| URL |
See More
| Suggests | |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
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| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | CALIB_1.50.0.tar.gz |
| Windows Binary | CALIB_1.50.0.zip |
| Mac OS X 10.11 (El Capitan) | CALIB_1.50.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/CALIB |
| Source Repository (Developer Access) | git clone [email protected]:packages/CALIB |
| Bioc Package Browser | https://code.bioconductor.org/browse/CALIB/ |
| Package Short Url | https://bioconductor.org/packages/CALIB/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.9 | Source Archive |