CAFE

This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see CAFE.

Chromosmal Aberrations Finder in Expression data

Bioconductor version: 3.9

Detection and visualizations of gross chromosomal aberrations using Affymetrix expression microarrays as input

Author: Sander Bollen

Maintainer: Sander Bollen <sander.h.bollen at gmail.com>

Citation (from within R, enter citation("CAFE")):

To install this package, start R (version "3.6") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("CAFE")

For older versions of R, please refer to the appropriate Bioconductor release.

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("CAFE")

biocViews	GeneExpression, GeneSetEnrichment, Microarray, OneChannel, Software
Version	1.20.0
In Bioconductor since	BioC 2.14 (R-3.1) (10 years)
License	GPL-3
Depends	R (>= 2.10), biovizBase, GenomicRanges, IRanges, ggbio
Imports	affy, ggplot2, annotate, grid, gridExtra, tcltk, Biobase
System Requirements
URL

Suggests	RUnit, BiocGenerics, BiocStyle
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report	Build Report

Follow Installation instructions to use this package in your R session.

Source Package	CAFE_1.20.0.tar.gz
Windows Binary	CAFE_1.20.0.zip (32- & 64-bit)
Mac OS X 10.11 (El Capitan)	CAFE_1.20.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/CAFE
Source Repository (Developer Access)	git clone [email protected]:packages/CAFE
Bioc Package Browser	https://code.bioconductor.org/browse/CAFE/
Package Short Url	https://bioconductor.org/packages/CAFE/
Package Downloads Report	Download Stats
Old Source Packages for BioC 3.9	Source Archive