BayesPeak

This package is for version 3.9 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see BayesPeak.

Bayesian Analysis of ChIP-seq Data

Bioconductor version: 3.9

This package is an implementation of the BayesPeak algorithm for peak-calling in ChIP-seq data.

Author: Christiana Spyrou, Jonathan Cairns, Rory Stark, Andy Lynch, Simon Tavar\\'{e},

Maintainer: Jonathan Cairns <jonathan.cairns at babraham.ac.uk>

Citation (from within R, enter citation("BayesPeak")):

Installation

To install this package, start R (version "3.6") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("BayesPeak")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("BayesPeak")

BayesPeak Vignette	PDF	R Script
Reference Manual	PDF

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	ChIPSeq, Software
Version	1.36.0
In Bioconductor since	BioC 2.6 (R-2.11) (14 years)
License	GPL (>= 2)
Depends	R (>= 2.14), IRanges
Imports	IRanges, graphics
System Requirements
URL

Suggests	BiocStyle, parallel
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report	Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	BayesPeak_1.36.0.tar.gz
Windows Binary	BayesPeak_1.36.0.zip (32- & 64-bit)
Mac OS X 10.11 (El Capitan)	BayesPeak_1.36.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/BayesPeak
Source Repository (Developer Access)	git clone [email protected]:packages/BayesPeak
Bioc Package Browser	https://code.bioconductor.org/browse/BayesPeak/
Package Short Url	https://bioconductor.org/packages/BayesPeak/
Package Downloads Report	Download Stats
Old Source Packages for BioC 3.9	Source Archive