BEAT
This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see BEAT.
BEAT - BS-Seq Epimutation Analysis Toolkit
Bioconductor version: 3.9
Model-based analysis of single-cell methylation data
Author: Kemal Akman <akman at mpipz.mpg.de>
Maintainer: Kemal Akman <akman at mpipz.mpg.de>
Citation (from within R, enter
citation("BEAT")):
Installation
To install this package, start R (version "3.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("BEAT")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("BEAT")| Analysing single-cell BS-Seq data with the "BEAT" package | R Script | |
| Reference Manual |
Details
| biocViews | DNAMethylation, Epigenetics, Genetics, ImmunoOncology, MethylSeq, Software |
| Version | 1.22.0 |
| In Bioconductor since | BioC 2.14 (R-3.1) (10 years) |
| License | LGPL (>= 3.0) |
| Depends | R (>= 2.13.0) |
| Imports | GenomicRanges, ShortRead, Biostrings, BSgenome |
| System Requirements | |
| URL |
See More
| Suggests | |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | BEAT_1.22.0.tar.gz |
| Windows Binary | BEAT_1.22.0.zip |
| Mac OS X 10.11 (El Capitan) | BEAT_1.22.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/BEAT |
| Source Repository (Developer Access) | git clone [email protected]:packages/BEAT |
| Bioc Package Browser | https://code.bioconductor.org/browse/BEAT/ |
| Package Short Url | https://bioconductor.org/packages/BEAT/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.9 | Source Archive |