ABSSeq

This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see ABSSeq.

ABSSeq: a new RNA-Seq analysis method based on modelling absolute expression differences

Bioconductor version: 3.9

Inferring differential expression genes by absolute counts difference between two groups, utilizing Negative binomial distribution and moderating fold-change according to heterogeneity of dispersion across expression level.

Author: Wentao Yang

Maintainer: Wentao Yang <wyang at zoologie.uni-kiel.de>

Citation (from within R, enter citation("ABSSeq")):

Installation

To install this package, start R (version "3.6") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("ABSSeq")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("ABSSeq")

ABSSeq	PDF	R Script
Reference Manual	PDF
NEWS	Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	DifferentialExpression, Software
Version	1.38.0
In Bioconductor since	BioC 2.14 (R-3.1) (10 years)
License	GPL (>= 3)
Depends	R (>= 2.10), methods
Imports	locfit, limma
System Requirements
URL

Suggests	edgeR
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Build Report	Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	ABSSeq_1.38.0.tar.gz
Windows Binary	ABSSeq_1.38.0.zip
Mac OS X 10.11 (El Capitan)	ABSSeq_1.38.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/ABSSeq
Source Repository (Developer Access)	git clone [email protected]:packages/ABSSeq
Bioc Package Browser	https://code.bioconductor.org/browse/ABSSeq/
Package Short Url	https://bioconductor.org/packages/ABSSeq/
Package Downloads Report	Download Stats
Old Source Packages for BioC 3.9	Source Archive