MouseThymusAgeing
This package is for version 3.14 of Bioconductor; for the stable, up-to-date release version, see MouseThymusAgeing.
Single-cell Transcriptomics Data of the Ageing Mouse Thymus
Bioconductor version: 3.14
This package provides data access to counts matrices and meta-data for single-cell RNA sequencing data of thymic epithlial cells across mouse ageing using SMARTseq2 and 10X Genommics chemistries. Access is provided as a data package via ExperimentHub. It is designed to facilitate the re-use of data from Baran-Gale _et al._ in a consistent format that includes relevant and informative meta-data.
Author: Mike Morgan [aut, cre], Jeanette Baran-Gale [aut]
Maintainer: Mike Morgan <michael.morgan at cruk.cam.ac.uk>
citation("MouseThymusAgeing")):
Installation
To install this package, start R (version "4.1") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("MouseThymusAgeing")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("MouseThymusAgeing")| Available datasets | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | ExperimentData, ExperimentHub, ExpressionData, SingleCellData |
| Version | 1.2.0 |
| License | GPL-3 |
| Depends | SingleCellExperiment, SummarizedExperiment |
| Imports | ExperimentHub, methods, BiocGenerics, S4Vectors |
| System Requirements | |
| URL | |
| Bug Reports | https://github.com/MarioniLab/MouseThymusAgeing/issues |
See More
| Suggests | knitr, scuttle, rmarkdown, BiocStyle |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | MouseThymusAgeing_1.2.0.tar.gz |
| Windows Binary | |
| macOS 10.13 (High Sierra) | |
| Source Repository | git clone https://git.bioconductor.org/packages/MouseThymusAgeing |
| Source Repository (Developer Access) | git clone [email protected]:packages/MouseThymusAgeing |
| Package Short Url | https://bioconductor.org/packages/MouseThymusAgeing/ |
| Package Downloads Report | Download Stats |