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EBSeq

This package is for version 3.14 of Bioconductor; for the stable, up-to-date release version, see EBSeq.

An R package for gene and isoform differential expression analysis of RNA-seq data


Bioconductor version: 3.14

Differential Expression analysis at both gene and isoform level using RNA-seq data

Author: Ning Leng, Christina Kendziorski

Maintainer: Ning Leng <lengning1 at gmail.com>

Citation (from within R, enter citation("EBSeq")):

Installation

To install this package, start R (version "4.1") and enter: 


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("EBSeq")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("EBSeq")
EBSeq Vignette PDF R Script
Reference Manual PDF
NEWS Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews DifferentialExpression, ImmunoOncology, MultipleComparison, RNASeq, Sequencing, Software, StatisticalMethod
Version 1.34.0
In Bioconductor since BioC 2.13 (R-3.0) (10.5 years)
License Artistic-2.0
Depends blockmodeling, gplots, testthat, R (>= 3.0.0)
Imports
System Requirements
URL
See More
Suggests
Linking To
Enhances
Depends On Me EBSeqHMM, Oscope
Imports Me DEsubs, scDD
Suggests Me compcodeR
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package EBSeq_1.34.0.tar.gz
Windows Binary EBSeq_1.34.0.zip
macOS 10.13 (High Sierra) EBSeq_1.34.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/EBSeq
Source Repository (Developer Access) git clone [email protected]:packages/EBSeq
Bioc Package Browser https://code.bioconductor.org/browse/EBSeq/
Package Short Url https://bioconductor.org/packages/EBSeq/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.14 Source Archive