CAEN
This package is for version 3.14 of Bioconductor; for the stable, up-to-date release version, see CAEN.
Category encoding method for selecting feature genes for the classification of single-cell RNA-seq
Bioconductor version: 3.14
With the development of high-throughput techniques, more and more gene expression analysis tend to replace hybridization-based microarrays with the revolutionary technology.The novel method encodes the category again by employing the rank of samples for each gene in each class. We then consider the correlation coefficient of gene and class with rank of sample and new rank of category. The highest correlation coefficient genes are considered as the feature genes which are most effective to classify the samples.
Author: Zhou Yan [aut, cre]
Maintainer: Zhou Yan <2160090406 at email.szu.edu.cn>
citation("CAEN")):
Installation
To install this package, start R (version "4.1") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("CAEN")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("CAEN")| CAEN Tutorial | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | ATACSeq, Classification, DifferentialExpression, GeneExpression, RIPSeq, RNASeq, Sequencing, SingleCell, Software |
| Version | 1.2.0 |
| In Bioconductor since | BioC 3.13 (R-4.1) (3 years) |
| License | GPL-2 |
| Depends | R (>= 4.1) |
| Imports | stats, PoiClaClu, SummarizedExperiment, methods |
| System Requirements | |
| URL |
See More
| Suggests | knitr, rmarkdown |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | CAEN_1.2.0.tar.gz |
| Windows Binary | CAEN_1.2.0.zip |
| macOS 10.13 (High Sierra) | CAEN_1.2.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/CAEN |
| Source Repository (Developer Access) | git clone [email protected]:packages/CAEN |
| Bioc Package Browser | https://code.bioconductor.org/browse/CAEN/ |
| Package Short Url | https://bioconductor.org/packages/CAEN/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.14 | Source Archive |