waveTiling
This package is deprecated. It will probably be removed from Bioconductor. Please refer to the package end-of-life guidelines for more information.
This package is for version 3.11 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see waveTiling.
Wavelet-Based Models for Tiling Array Transcriptome Analysis
Bioconductor version: 3.11
This package is designed to conduct transcriptome analysis for tiling arrays based on fast wavelet-based functional models.
Author: Kristof De Beuf <kristof.debeuf at UGent.be>, Peter Pipelers <peter.pipelers at ugent.be> and Lieven Clement <lieven.clement at gmail.com>
Maintainer: Kristof De Beuf <kristof.debeuf at UGent.be>
citation("waveTiling")):
Installation
To install this package, start R (version "4.0") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("waveTiling")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
| Reference Manual |
Details
| biocViews | DifferentialExpression, GeneExpression, Microarray, Software, TimeCourse |
| Version | 1.30.0 |
| In Bioconductor since | BioC 2.11 (R-2.15) (11.5 years) |
| License | GPL (>=2) |
| Depends | oligo, oligoClasses, Biobase, Biostrings, GenomeGraphs |
| Imports | methods, affy, preprocessCore, GenomicRanges, waveslim, IRanges |
| System Requirements | |
| URL | https://r-forge.r-project.org/projects/wavetiling/ |
See More
| Suggests | BSgenome, BSgenome.Athaliana.TAIR.TAIR9, waveTilingData, pd.atdschip.tiling, TxDb.Athaliana.BioMart.plantsmart22 |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | |
| Windows Binary | |
| macOS 10.13 (High Sierra) | |
| Source Repository | git clone https://git.bioconductor.org/packages/waveTiling |
| Source Repository (Developer Access) | git clone [email protected]:packages/waveTiling |
| Package Short Url | https://bioconductor.org/packages/waveTiling/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.11 | Source Archive |