XCIR

This package is for version 3.11 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see XCIR.

XCI-inference

Bioconductor version: 3.11

Models and tools for subject level analysis of X chromosome inactivation (XCI) and XCI-escape inference.

Author: Renan Sauteraud, Dajiang Liu

Maintainer: Renan Sauteraud <rxs575 at psu.edu>

Citation (from within R, enter citation("XCIR")):

Installation

To install this package, start R (version "4.0") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("XCIR")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("XCIR")

Introduction to XCIR	HTML	R Script
Reference Manual	PDF
NEWS	Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	Coverage, RNASeq, Sequencing, Software, StatisticalMethod
Version	1.2.0
In Bioconductor since	BioC 3.10 (R-3.6) (4.5 years)
License	GPL-2
Depends	methods
Imports	stats, utils, data.table, IRanges, VariantAnnotation, seqminer, ggplot2, biomaRt, readxl, S4Vectors
System Requirements
URL	https://github.com/SRenan/XCIR
Bug Reports	https://github.com/SRenan/XCIR/issues

Suggests	knitr, rmarkdown
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report	Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	XCIR_1.2.0.tar.gz
Windows Binary	XCIR_1.2.0.zip
macOS 10.13 (High Sierra)	XCIR_1.2.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/XCIR
Source Repository (Developer Access)	git clone [email protected]:packages/XCIR
Bioc Package Browser	https://code.bioconductor.org/browse/XCIR/
Package Short Url	https://bioconductor.org/packages/XCIR/
Package Downloads Report	Download Stats
Old Source Packages for BioC 3.11	Source Archive