TNBC.CMS
This package is for version 3.11 of Bioconductor; for the stable, up-to-date release version, see TNBC.CMS.
TNBC.CMS: Prediction of TNBC Consensus Molecular Subtypes
Bioconductor version: 3.11
This package implements a machine learning-based classifier for the assignment of consensus molecular subtypes to TNBC samples. It also provides functions to summarize genomic and clinical characteristics.
Author: Doyeong Yu, Jihyun Kim, In Hae Park, Charny Park
Maintainer: Doyeong Yu <parklab.bi at gmail.com>
citation("TNBC.CMS")):
Installation
To install this package, start R (version "4.0") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("TNBC.CMS")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("TNBC.CMS")| TNBC.CMS.pdf | R Script | |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | Classification, Clustering, GeneExpression, GenePrediction, Software, SupportVectorMachine |
| Version | 1.4.0 |
| In Bioconductor since | BioC 3.9 (R-3.6) (5 years) |
| License | GPL-3 |
| Depends | R (>= 3.6.0), e1071, quadprog, SummarizedExperiment |
| Imports | GSVA(>= 1.26.0), pheatmap, grDevices, RColorBrewer, pracma, GGally, R.utils, forestplot, ggplot2, ggpubr, survival, grid, stats, methods |
| System Requirements | |
| URL |
See More
| Suggests | knitr |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | TNBC.CMS_1.4.0.tar.gz |
| Windows Binary | TNBC.CMS_1.4.0.zip |
| macOS 10.13 (High Sierra) | TNBC.CMS_1.4.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/TNBC.CMS |
| Source Repository (Developer Access) | git clone [email protected]:packages/TNBC.CMS |
| Bioc Package Browser | https://code.bioconductor.org/browse/TNBC.CMS/ |
| Package Short Url | https://bioconductor.org/packages/TNBC.CMS/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.11 | Source Archive |