Changes in version 1.5.13 o Order features selected in heat map selectize from top to bottom. Changes in version 1.5.12 o Support gene list input from aceEditor and fileInput. Changes in version 1.5.11 o Rename isColorMapCompatible to checkColormapCompatibility. o Fix graceful server side handling of checkColormapCompatibility. o Update documentation about panel organisation in vignette. Changes in version 1.5.10 o Fix test to provide a non-empty selection to custom plot function. Changes in version 1.5.9 o Introduce Bugs Easter egg. Changes in version 1.5.8 o Substitute deprecated scater::normalize by logNormCounts. Changes in version 1.5.7 o Simplify protection of redDimPlotDefaults against empty reducedDims. o Fix to declare all panel types not available. Changes in version 1.5.6 o Updates following deprecation of isSpike and sizeFactorNames. Changes in version 1.5.5 o Add modeEmpty(). o Support zero-row initialPanels argument. Changes in version 1.5.4 o Added support for file upload with server re-initialization. o Moved observers to separate file. Exclude from code coverage. o Updating calls to ReprocessedAllenData() to load only tophat_counts assay. Changes in version 1.5.3 o Use ReprocessedAllenData() following the deprecation of data(allen). Changes in version 1.5.2 o Minor doc fix.. o Do not allow duplicated values in Name field of initialPanels. o Downsample points randomly. Changes in version 1.5.1 o Fix report of table links. Changes in version 1.5.0 o Bioconductor release. Changes in version 1.3.9 o Add ORCID identifiers. o Fix subscript error when tables receive a selection. o Fix panel names in panel organization selectize input. o Control the application of panel organization updates using an action button. o Fix child replotting upon lasso close. o Fix code reporting for zero-length DataFrame Changes in version 1.3.8 o Support multiple selections. o Avoid Javascript error with check group conditional. Changes in version 1.3.7 o Add ImmunoOncology in biocViews. Changes in version 1.3.6 o Control point size. Changes in version 1.3.5 o Additional information during the default tour. Changes in version 1.3.4 o Fix panel organization selectize. Changes in version 1.3.3 o Update default tour steps to match updated user interface. o Parse quote symbols literally in default tour steps. o Fix name-to-index conversion of feature names for heat map panel. Changes in version 1.3.2 o Move panel organization to modal with selectize to control panel display and ordering, remove sidebar. o Add control of width and height of new panels. o Enable voice control. o Refactor internal functions. Changes in version 1.3.1 o Fix invalid row index sent from tables in RStudio browser. o Fix initialization of search fields for tables that are initialized with an incoming selection. o Fix constant field name. Changes in version 1.3.0 o Bioconductor release. Changes in version 1.1.14 o Fix unit test. Changes in version 1.1.13 o Add missing observer for assay type in row data plot panels. o Add missing observer for colorpicker when colouring by feature name in row-based plots, or by sample name in column-based plots. o Ignore NA values when computing the range of coloring scales. o Add a size expansion factor (5x) to the selected point when colouring by feature name in row-based plots, or by sample name in column-based plots. o Fix redundant coloring of selected point when colouring by feature name in row-based plots, or by sample name in column-based plots. o Update basic vignette. Changes in version 1.1.12 o Updated NEWS file. Changes in version 1.1.11 o Export list of panel names and codes. Changes in version 1.1.10 o Fix colour scale to be invariant when selecting on a different color. o Protect heat map plot panels against restriction on zero samples. Changes in version 1.1.9 o Fix compatibility with DelayedArray assays. Changes in version 1.1.8 o Extend unit test coverage. o Move generics to separate file. o Minor fix to annotateEnsembl. o Update list of functionalities in README. Changes in version 1.1.7 o Resolved BiocManager message. Changes in version 1.1.6 o Minor fix for Windows unit test. Changes in version 1.1.5 o New panel colors. o Control arguments to custom panels through action buttons. o Distinguish visible from active arguments for custom panels. Changes in version 1.1.4 o Split ?defaults help page by panel type. o Generalized support for custome data plots and statistics tables. Changes in version 1.1.3 o Add new _Sample assay plot_ panel type. o Extend documentation. o Split vignette into three: basic, advanced, ExperimentColorMap. o Fix initialization of reduced dimensions with a single plot axis choice. o Substitute discouraged use of sapply. o Moved roxygen importFrom instructions closer to the relevant code. o Increase unit test coverage. o Consistent use of "colormap" through the package. o Update installation instructions. o Add CITATION file. o Add Figure 1 of article in README. Changes in version 1.1.2 o Enable faceting by row and column, with appropriate updates to brush and lasso. o Enable shaping on data points. o Minor fix of jitter for violin and square plots. o INTERNAL: Enable storage of additional plot.data beyond X and Y in all.coordinates. See constant .allCoordinatesNames. Necessary for correct behaviour of brushes on faceted plots. Changes in version 1.1.0 o Bioconductor release. Changes in version 1.0.1 o Rename feature expression plots to feature assay plots, for generality. Changes in version 0.99.3 o Custom tours can be restarted via the dropdown menu button, overwriting the default tour. o Add functionality to provide a custom title to be displayed in the app. o Preserve data points and width ratio upon zoom on discrete variables. Changes in version 0.99.2 o Add functionality for providing additional custom tours, to be launched directly upon starting the app. Changes in version 0.99.1 o Add grid-based visual point downsampling for faster plotting, including control of resolution. o Add button "Clear features" for heat maps. o Reorganize buttons in heat map panels. o Maintainer badge transferred to Federico. Changes in version 0.99.0 o Initial submission to _Bioconductor_.