sesame
This package is for version 3.10 of Bioconductor; for the stable, up-to-date release version, see sesame.
Tools For Analyzing Illumina Infinium DNA Methylation Arrays
Bioconductor version: 3.10
Tools For analyzing Illumina Infinium DNA methylation arrays.
Author: Wanding Zhou [aut, cre], Hui Shen [aut], Timothy Triche [ctb], Bret Barnes [ctb]
Maintainer: Wanding Zhou <zhouwanding at gmail.com>
Citation (from within R, enter
citation("sesame")
):
Installation
To install this package, start R (version "3.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("sesame")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("sesame")
0. SeSAMe User Guide | HTML | R Script |
1. Quality Controls | HTML | R Script |
2. Large Data | HTML | R Script |
3. Minfi Interaction | HTML | R Script |
Reference Manual | ||
NEWS | Text | |
LICENSE | Text |
Details
biocViews | DNAMethylation, MethylationArray, Preprocessing, QualityControl, Software |
Version | 1.4.0 |
In Bioconductor since | BioC 3.8 (R-3.5) (5.5 years) |
License | MIT + file LICENSE |
Depends | R (>= 3.6), sesameData, methods |
Imports | BiocParallel, R6, grDevices, utils, illuminaio, MASS, GenomicRanges, IRanges, grid, preprocessCore, stats, S4Vectors, randomForest, wheatmap, ggplot2, parallel, matrixStats, DNAcopy |
System Requirements | |
URL | https://github.com/zwdzwd/sesame |
Bug Reports | https://github.com/zwdzwd/sesame/issues |
See More
Suggests | scales, knitr, rmarkdown, testthat, minfi, SummarizedExperiment, FlowSorted.CordBloodNorway.450k, FlowSorted.Blood.450k, dplyr, tidyr, BiocStyle |
Linking To | |
Enhances | |
Depends On Me | |
Imports Me | TCGAbiolinksGUI |
Suggests Me | sesameData, TCGAbiolinks |
Links To Me | |
Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
Source Package | sesame_1.4.0.tar.gz |
Windows Binary | sesame_1.4.0.zip |
Mac OS X 10.11 (El Capitan) | sesame_1.4.0.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/sesame |
Source Repository (Developer Access) | git clone [email protected]:packages/sesame |
Bioc Package Browser | https://code.bioconductor.org/browse/sesame/ |
Package Short Url | https://bioconductor.org/packages/sesame/ |
Package Downloads Report | Download Stats |
Old Source Packages for BioC 3.10 | Source Archive |