sangerseqR

This package is for version 3.10 of Bioconductor; for the stable, up-to-date release version, see sangerseqR.

Tools for Sanger Sequencing Data in R

Bioconductor version: 3.10

This package contains several tools for analyzing Sanger Sequencing data files in R, including reading .scf and .ab1 files, making basecalls and plotting chromatograms.

Author: Jonathon T. Hill, Bradley Demarest

Maintainer: Jonathon Hill <jhill at byu.edu>

Citation (from within R, enter citation("sangerseqR")):

Installation

To install this package, start R (version "3.6") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("sangerseqR")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("sangerseqR")

sangerseqR	PDF	R Script
Reference Manual	PDF

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	SNP, Sequencing, Software, Visualization
Version	1.22.0
In Bioconductor since	BioC 2.14 (R-3.1) (10 years)
License	GPL-2
Depends	R (>= 3.0.2), Biostrings
Imports	methods, shiny
System Requirements
URL

Suggests	BiocStyle, knitr, RUnit, BiocGenerics
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me	CrispRVariants
Links To Me
Build Report	Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	sangerseqR_1.22.0.tar.gz
Windows Binary	sangerseqR_1.22.0.zip (32- & 64-bit)
Mac OS X 10.11 (El Capitan)	sangerseqR_1.22.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/sangerseqR
Source Repository (Developer Access)	git clone [email protected]:packages/sangerseqR
Bioc Package Browser	https://code.bioconductor.org/browse/sangerseqR/
Package Short Url	https://bioconductor.org/packages/sangerseqR/
Package Downloads Report	Download Stats
Old Source Packages for BioC 3.10	Source Archive