rBiopaxParser
This package is for version 3.10 of Bioconductor; for the stable, up-to-date release version, see rBiopaxParser.
Parses BioPax files and represents them in R
Bioconductor version: 3.10
Parses BioPAX files and represents them in R, at the moment BioPAX level 2 and level 3 are supported.
Author: Frank Kramer
Maintainer: Frank Kramer <dev at frankkramer.de>
Citation (from within R, enter
citation("rBiopaxParser")
):
Installation
To install this package, start R (version "3.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("rBiopaxParser")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("rBiopaxParser")
rBiopaxParser Vignette | R Script | |
Reference Manual | ||
NEWS | Text |
Details
biocViews | DataRepresentation, Software |
Version | 2.26.0 |
In Bioconductor since | BioC 2.12 (R-3.0) (11 years) |
License | GPL (>= 2) |
Depends | R (>= 3.0.0), data.table |
Imports | XML |
System Requirements | |
URL | https://github.com/frankkramer-lab/rBiopaxParser |
See More
Suggests | Rgraphviz, RCurl, graph, RUnit, BiocGenerics, nem, RBGL, igraph |
Linking To | |
Enhances | |
Depends On Me | |
Imports Me | AnnotationHubData, pwOmics |
Suggests Me | AnnotationHub, NetPathMiner |
Links To Me | |
Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
Source Package | rBiopaxParser_2.26.0.tar.gz |
Windows Binary | rBiopaxParser_2.26.0.zip |
Mac OS X 10.11 (El Capitan) | rBiopaxParser_2.26.0.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/rBiopaxParser |
Source Repository (Developer Access) | git clone [email protected]:packages/rBiopaxParser |
Bioc Package Browser | https://code.bioconductor.org/browse/rBiopaxParser/ |
Package Short Url | https://bioconductor.org/packages/rBiopaxParser/ |
Package Downloads Report | Download Stats |
Old Source Packages for BioC 3.10 | Source Archive |