miRBaseConverter
This package is for version 3.10 of Bioconductor; for the stable, up-to-date release version, see miRBaseConverter.
A comprehensive and high-efficiency tool for converting and retrieving the information of miRNAs in different miRBase versions
Bioconductor version: 3.10
A comprehensive tool for converting and retrieving the miRNA Name, Accession, Sequence, Version, History and Family information in different miRBase versions. It can process a huge number of miRNAs in a short time without other depends.
Author: Taosheng Xu<taosheng.x at gmail.com>, Thuc Le<Thuc.Le at unisa.edu.au>
Maintainer: Taosheng Xu<taosheng.x at gmail.com>
citation("miRBaseConverter")
):
Installation
To install this package, start R (version "3.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("miRBaseConverter")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("miRBaseConverter")
miRBaseConverter: A comprehensive and high-efficiency tool for converting and retrieving the information of miRNAs in different miRBase versions | HTML | R Script |
Reference Manual | ||
NEWS | Text |
Details
biocViews | Software, miRNA |
Version | 1.10.1 |
In Bioconductor since | BioC 3.6 (R-3.4) (6.5 years) |
License | GPL (>= 2) |
Depends | R (>= 3.4) |
Imports | stats |
System Requirements | |
URL | https://github.com/taoshengxu/miRBaseConverter |
Bug Reports | https://github.com/taoshengxu/miRBaseConverter/issues |
See More
Suggests | BiocGenerics, RUnit, knitr, rtracklayer, utils |
Linking To | |
Enhances | |
Depends On Me | |
Imports Me | |
Suggests Me | |
Links To Me | |
Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
Source Package | miRBaseConverter_1.10.1.tar.gz |
Windows Binary | miRBaseConverter_1.10.1.zip |
Mac OS X 10.11 (El Capitan) | miRBaseConverter_1.10.1.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/miRBaseConverter |
Source Repository (Developer Access) | git clone [email protected]:packages/miRBaseConverter |
Bioc Package Browser | https://code.bioconductor.org/browse/miRBaseConverter/ |
Package Short Url | https://bioconductor.org/packages/miRBaseConverter/ |
Package Downloads Report | Download Stats |
Old Source Packages for BioC 3.10 | Source Archive |