genefilter
This package is for version 3.10 of Bioconductor; for the stable, up-to-date release version, see genefilter.
genefilter: methods for filtering genes from high-throughput experiments
Bioconductor version: 3.10
Some basic functions for filtering genes.
Author: R. Gentleman, V. Carey, W. Huber, F. Hahne
Maintainer: Bioconductor Package Maintainer <maintainer at bioconductor.org>
Citation (from within R, enter
citation("genefilter")
):
Installation
To install this package, start R (version "3.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("genefilter")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("genefilter")
Additional plots for: Independent filtering increases power for detecting differentially expressed genes, Bourgon et al., PNAS (2010) | R Script | |
Diagnostics for independent filtering | R Script | |
How to find genes whose expression profile is similar to that of specified genes | R Script | |
Using the genefilter function to filter genes from a microarray dataset | R Script | |
Reference Manual | ||
NEWS | Text |
Details
biocViews | Microarray, Software |
Version | 1.68.0 |
In Bioconductor since | BioC 1.6 (R-2.1) or earlier (> 19 years) |
License | Artistic-2.0 |
Depends | |
Imports | BiocGenerics(>= 0.31.2), AnnotationDbi, annotate, Biobase, graphics, methods, stats, survival |
System Requirements | |
URL |
See More
Package Archives
Follow Installation instructions to use this package in your R session.
Source Package | genefilter_1.68.0.tar.gz |
Windows Binary | genefilter_1.68.0.zip |
Mac OS X 10.11 (El Capitan) | genefilter_1.68.0.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/genefilter |
Source Repository (Developer Access) | git clone [email protected]:packages/genefilter |
Bioc Package Browser | https://code.bioconductor.org/browse/genefilter/ |
Package Short Url | https://bioconductor.org/packages/genefilter/ |
Package Downloads Report | Download Stats |
Old Source Packages for BioC 3.10 | Source Archive |