divergence
This package is for version 3.10 of Bioconductor; for the stable, up-to-date release version, see divergence.
Divergence: Functionality for assessing omics data by divergence with respect to a baseline
Bioconductor version: 3.10
This package provides functionality for performing divergence analysis as presented in Dinalankara et al, "Digitizing omics profiles by divergence from a baseline", PANS 2018. This allows the user to simplify high dimensional omics data into a binary or ternary format which encapsulates how the data is divergent from a specified baseline group with the same univariate or multivariate features.
Author: Wikum Dinalankara <wdinala1 at jhmi.edu>, Luigi Marchionni <marchion at jhu.edu>, Qian Ke <qke1 at jhu.edu>
Maintainer: Wikum Dinalankara <wdinala1 at jhmi.edu>, Luigi Marchionni <marchion at jhu.edu>
citation("divergence")
):
Installation
To install this package, start R (version "3.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("divergence")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("divergence")
Performing Divergence Analysis | HTML | R Script |
Reference Manual | ||
LICENSE | Text |
Details
biocViews | Software, StatisticalMethod |
Version | 1.2.0 |
In Bioconductor since | BioC 3.9 (R-3.6) (5 years) |
License | GPL-2 |
Depends | R (>= 3.6), SummarizedExperiment |
Imports | |
System Requirements | |
URL |
See More
Suggests | knitr, rmarkdown |
Linking To | |
Enhances | |
Depends On Me | |
Imports Me | |
Suggests Me | |
Links To Me | |
Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
Source Package | divergence_1.2.0.tar.gz |
Windows Binary | divergence_1.2.0.zip |
Mac OS X 10.11 (El Capitan) | divergence_1.2.0.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/divergence |
Source Repository (Developer Access) | git clone [email protected]:packages/divergence |
Bioc Package Browser | https://code.bioconductor.org/browse/divergence/ |
Package Short Url | https://bioconductor.org/packages/divergence/ |
Package Downloads Report | Download Stats |
Old Source Packages for BioC 3.10 | Source Archive |