adaptest

This package is for version 3.10 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see adaptest.

Data-Adaptive Statistics for High-Dimensional Multiple Testing


Bioconductor version: 3.10

Data-adaptive test statistics represent a general methodology for performing multiple hypothesis testing on effects sizes while maintaining honest statistical inference when operating in high-dimensional settings (). The utilities provided here extend the use of this general methodology to many common data analytic challenges that arise in modern computational and genomic biology.

Author: Weixin Cai [aut, cre, cph] , Nima Hejazi [aut] , Alan Hubbard [ctb, ths]

Maintainer: Weixin Cai <wcai at berkeley.edu>

Citation (from within R, enter citation("adaptest")):

Installation

To install this package, start R (version "3.6") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("adaptest")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("adaptest")
Data-Mining Biomarkers and High-Dimensional Testing HTML R Script
Reference Manual PDF
NEWS Text

Details

biocViews DifferentialExpression, DimensionReduction, GeneExpression, Genetics, Microarray, MultipleComparison, Regression, Sequencing, Software
Version 1.6.1
In Bioconductor since BioC 3.7 (R-3.5) (6 years)
License GPL-2
Depends R (>= 3.6.0)
Imports methods, graphics, stats, utils, calibrate, origami (>= 1.0.0), SummarizedExperiment, S4Vectors, tmle
System Requirements
URL https://github.com/wilsoncai1992/adaptest
Bug Reports https://github.com/wilsoncai1992/adaptest/issues
See More
Suggests Matrix, testthat, rmarkdown, knitr, BiocStyle, SuperLearner, earth, gam, nnls, airway
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package adaptest_1.6.1.tar.gz
Windows Binary adaptest_1.6.1.zip
Mac OS X 10.11 (El Capitan) adaptest_1.6.1.tgz
Source Repository git clone https://git.bioconductor.org/packages/adaptest
Source Repository (Developer Access) git clone [email protected]:packages/adaptest
Bioc Package Browser https://code.bioconductor.org/browse/adaptest/
Package Short Url https://bioconductor.org/packages/adaptest/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.10 Source Archive