XCIR
This package is for version 3.10 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see XCIR.
XCI-inference
Bioconductor version: 3.10
Models and tools for subject level analysis of X chromosome inactivation (XCI) and XCI-escape inference.
Author: Renan Sauteraud, Dajiang Liu
Maintainer: Renan Sauteraud <rxs575 at psu.edu>
Citation (from within R, enter
citation("XCIR")):
Installation
To install this package, start R (version "3.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("XCIR")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("XCIR")| Introduction to XCIR | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | Coverage, RNASeq, Sequencing, Software, StatisticalMethod |
| Version | 1.0.0 |
| In Bioconductor since | BioC 3.10 (R-3.6) (4.5 years) |
| License | GPL-2 |
| Depends | methods |
| Imports | stats, utils, data.table, IRanges, VariantAnnotation, seqminer, ggplot2, biomaRt, readxl, S4Vectors |
| System Requirements | |
| URL | https://github.com/SRenan/XCIR |
| Bug Reports | https://github.com/SRenan/XCIR/issues |
See More
| Suggests | knitr, rmarkdown |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | XCIR_1.0.0.tar.gz |
| Windows Binary | XCIR_1.0.0.zip |
| Mac OS X 10.11 (El Capitan) | XCIR_1.0.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/XCIR |
| Source Repository (Developer Access) | git clone [email protected]:packages/XCIR |
| Bioc Package Browser | https://code.bioconductor.org/browse/XCIR/ |
| Package Short Url | https://bioconductor.org/packages/XCIR/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.10 | Source Archive |